Protein ZmLBD16
ZmLBD16 is a protein in the LBD family.
Information
TF Name: ZmLBD16
Species: Maize
TF Family: LBD
Gene Name(Synonym): RA2
Uniprot ID: A0A1D6PDQ1

Protein ZmLBD16

ZmLBD16 is a protein in the LBD family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d039694DAPseq no logo sequence fimo position
Zm00001d039694DAPseq no logo sequence fimo position
Zm00001d039694ChIPseq no logo sequence fimo position
Zm00001d039694PChIPseq no logo sequence fimo position

Interactions where ZmLBD16 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmLBD16 is the target  
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There are 60 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb123060_T006 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available

Nucleotide Sequence
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AAGATCGCGATGCATATTATTCACA...

Zm00001d039694_T001 from maize genome v4

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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ATGGCGTCCCCGTCGAGCACCAGCA...

Zm00001eb123060_T001 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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AACACTCTCACCTCCTCTCATTCAA...

Zm00001eb123060_T002 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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AACACTCTCACCTCCTCTCATTCAA...

Zm00001eb123060_T003 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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AACACTCTCACCTCCTCTCATTCAA...

Zm00001eb123060_T004 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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AACACTCTCACCTCCTCTCATTCAA...

Zm00001eb123060_T005 from maize genome v5

Amino Acid Sequence
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MASPSSTSNNSAFSPVAASAGTTMPGAGAPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLP
HQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKELDAAHAELLRYACGDVAAGIPTALPVVSAAPRLSTAPM
TTTSPGQFAAGMYGSGRRLGVVDGLAAPPLPPSGGGGGCYFMRNHHNNVVISSSPGADVAPVLPYASVANWAVNAISAST
TTTSGSESIGLDHKEGGDSSM

Nucleotide Sequence
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TGCATCCTCCATTTGTGTTCATGAT...


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